Position: Home > Articles > Data Formater, a Software for SSR Data Formatting to Develop Population Genetics Analysis
Molecular Plant Breeding
2016
(1)
265-270
SSR数据格式转换软件DataFormater
作 者：
樊文强;盖红梅;孙鑫;杨爱国;张忠锋
单 位：
中国农业科学院烟草研究所中国农业科学院烟草遗传改良与生物技术重点开放实验室中国农业科学院研究生院;中国农业科学院烟草研究所;山东农业大学农学院;中国农业科学院
关键词：
分子群体遗传学;分子标记;SSR;数据格式;软件;Python计算机语言
摘 要：
随着分子群体遗传学的快速发展和SSR标记的广泛应用,一些分子群体遗传学分析软件相继问世。但是不同软件的SSR数据输入文件格式并不一致,人工转换费时费力,且易出错。因此,本研究利用Python高级计算机语言开发了SSR分子标记数据格式转换软件Data Formater。该软件具有友好的图形用户界面,能高效准确的把SSR原始数据快速转换为Popgene、Ntsys、Power Marker、Structure、Tassel、SPAGe Di等常用分子群体遗传学分析软件的输入文件,同时还具过滤稀有等位、过滤无多态位点、用户数据校验等功能。与人工转换相比,Data Formater可大大提高转换的效率和准确性。因此,Data Formater将是分子群体遗传学研究中不可或缺的工具软件。现在用户可以通过Data Formater软件的主页进行下载,网址为:www.ycsjk.com.cn/dataformater/home/,或通过电子邮件renmin@caas.cn索取该软件。
译 名：
Data Formater, a Software for SSR Data Formatting to Develop Population Genetics Analysis
作 者：
Fan Wenqiang;Ge Hongmei;Sun Xin;Yang Aiguo;Zhang Zhongfeng;Ren Min;Key Laboratory of Tobacco Genetic Improvement and Biotechnology, Tobacco Research Institute, Chinese Academy of Agricultural Sciences;Post Graduate School, Chinese Academy of Agricultural Sciences;Qingdao Academy of Agricultural Sciences;
关键词：
Molecular population genetics;;Molecular marker;;Simple sequence repeats;;Data format;;Software;;Python language
摘 要：
With the rapid development of molecular population genetics and the widespread application of SSR marker, much molecular population genetics software appears, consecutively. However, the format of SSR data for different genetics software is not the same. Manual data transform for different genetic software would take long time and would always make mistakes. Therefore, the software Data Formater was developed with Python language for SSR data formatting to different population genetics software. The software has a friendly graphical user interface, and can transform original SSR data into the input file for Popgene, Ntsys, Power Marker, Structure, Tassel and SPAGe Di. Meanwhile, it can filter rare alleles and monomorphic loci, and validate users' original data.Compared with artificial way, the software Data Formater can improve the efficiency and accuracy of data formatter significantly. So that it's a necessary tool in the study of molecular population genetics. Now, the user can download Data Formater conveniently through www.ycsjk.com.cn/dataformater/home/ or email renmin@caas.cn.
相似文章
-
鱼类线粒体DNA及其研究进展 [陈四海, 区又君, 李加儿] 生物技术通报 2011,0 (3) 13-20
