中国农业期刊集成服务平台

当前位置: 首页 > 文章 > Transcriptomic, proteomic, and phosphoproteomic analyses reveal dynamicsignaling networks influencing long-grain rice development 作物学报(英文版) 2022,10 (3)

Position: Home > Articles > Transcriptomic, proteomic, and phosphoproteomic analyses reveal dynamicsignaling networks influencing long-grain rice development The Crop Journal 2022,10 (3)

Transcriptomic, proteomic, and phosphoproteomic analyses reveal dynamicsignaling networks influencing long-grain rice development

作者：

Chen, Fangyu;Wang, Yongsheng;Zhang, Zesen;Chen, Xiaolong;Huang, Jinpeng;Chen, Zhiming;Zheng, Jingsheng;Jiang, Liangrong;Huang, Yumin;Wang, Houcong;Huang, Rongy

单位：

Huang, Rongyu] Xiamen Univ, Sch Life Sci, Xiamen 361102, Fujian, Peoples R China.;[Chen, Xiaolong] Hunan Shunqi Biotechnol Co Ltd, Yongzhou 426100, Hunan, Peoples R China; Wang, Houcong;[Zhang, Zesen; Zheng, Jingsheng;Fujian Agr & Forestry Univ, Coll Agr, Key Lab Minist Educ Genet Improvement & Comprehens, Fujian Prov Key Lab Crop Breeding Design, Fuzhou 350002, Fujian, Peoples R China.; Huang, Jinpeng; Chen, Xiaolong; Jiang, Liangrong;[Wang, Yongsheng] Hebei Univ, Sch Life Sci, Postdoctoral Stn Biol, Baoding 071000, Hebei, Peoples R China.; Huang, Yumin

关键词：

Proteome;Phosphoproteome;Transcriptome;Young panicle;Grain siz

摘要：

The LGS1 (Large grain size 1) gene, also known as GS2/GL2/OsGRF4, is involved in regulating grain size and quality in rice, but the mechanism governing grain size has not been elucidated. We performed transcrip-tomic, proteomic, and phosphoproteomic analyses of young rice panicles in Samba (a wild-type cultivar with extra-small grain) and NIL-LGS1 (a nearly isogenic line of LGS1 with large grain in the Samba genetic background) at three developmental stages (4-6) to identify internal dynamic functional networks deter-mining grain size that are mediated by LGS1. Differentially expressed proteins formed seven highly func-tionally correlated clusters. The concordant regulation of multiple functional clusters may be key features of the development of grain length in rice. In stage 5, 16 and 24 phosphorylated proteins were signifi-cantly up-regulated and down-regulated, and dynamic phosphorylation events may play accessory roles in determining rice grain size by participating in protein-protein interaction networks. Transcriptomic analysis in stage 5 showed that differentially expressed alternative splicing events and dynamic gene reg-ulatory networks based on 39 transcription factors and their highly correlated target genes might con-tribute to rice grain development. Integrative multilevel omics analysis suggested that the regulatory network at the transcriptional and posttranscriptional levels could be directly manifested at the transla-tional level, and this analysis also suggested a regulatory mechanism, regulation of protein translation levels, in the biological process that extends from transcript to protein to the development of grain. Functional analysis suggested that biological processes including MAPK signaling, calcium signaling, cell proliferation, cell wall, energy metabolism, hormone pathway, and ubiquitin-proteasome pathway might be involved in LGS1-mediated regulation of grain length. Thus, LGS1-mediated regulation of grain size is affected by dynamic transcriptional, posttranscriptional, translational and posttranslational changes. (c) 2021 Crop Science Society of China and Institute of Crop Science, CAAS. Production and hosting by Elsevier B.V. on behalf of KeAi Communications Co., Ltd. This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).

相似文章

硅树脂乳房灌输物上发现新蛋白质食品科学 2007,28 (1) 321
Transcriptomic, proteomic, and phosphoproteomic analyses reveal dynamic signaling networks influencing long-grain rice development [Fangyu Chen, Yongsheng Wang, Zesen Zhang, Xiaolong Chen, Junhua Huang, Zhiming Chen, Jingsheng Zheng, Liangrong Jiang, Yuxin Huang, Houcong Wang, Rongyu Huan] 作物学报(英文版) 2022,10 (3)
Proteomic analysis of differentially abundant proteins in the embryo and endosperm of Givotia moluccana (L.) Sreem [Durgeshwar Pullaiahgari, Rajesh Kumar Meena, Swaroopa Rani Tirupaati, Padmaja Gudipall] 林业研究(英文版) 2019,31 (6)
Comprehensive analyses of the proteome and ubiquitome revealed mechanism of high temperature accelerating petal abscission in tree peony [Chunying Liu, Ziqi Liu, Yuan Yang, Yuxi Zhang, Yifu Fang, Junqiang Chen, Shupeng Ga] 园艺学报(英文版) 2022,10 (1)
Protein profiles of enzymatically isolated rumen epithelium in sheep fed a fibrous diet [J. J. Bond, A. J. Donaldson, Joëlle V. F. Coumans, K. L. Austin, Daniel Ebert, David A. Wheeler, V. H. Odd] 畜牧与生物技术杂志(英文版) 2019,10
FMO3 deficiency of duck leads to decreased lipid deposition and increased antibacterial activity [Xingzheng Li, Jie Song, Xuefeng Shi, Mingyi Huang, Lei Liu, Guoqiang Yi, Ning Yang, Guiyun Xu, Jiangxia Zhen] 畜牧与生物技术杂志(英文版) 2022,13 (1)
Transcriptomic and proteomic analyses of far-red light effects in inducing shoot elongation in the presence or absence of paclobutrazol in Chinese pine [Yang-Dong Guo, Shihui Niu, Yousry A. El‐Kassaby, Wei L] 林业研究(英文版) 2021,33 (3)
Insights into the proteomic profile of newly harvested corn and metagenomic analysis of the broiler intestinal microbiota [Dafei Yin, Youli Wang, Liqun Wang, Yuqin Wu, Bian Xiao-yi, Samuel E. Aggrey, Jianmin Yua] 畜牧与生物技术杂志(英文版) 2022,13 (1)
Maize multi-omics reveal leaf water status controlling of differential transcriptomes, proteomes and hormones as mechanisms of age-dependent osmotic stress response in leaves [Liangjie Niu, Wenkang Wang, Yingxue Li, Xiaolin Wu, Wei Wan] 逆境生物学（英文） 2024,4 (1)

导出引用

计量

文章访问数: 11

HTML全文浏览量: 0

PDF下载量: 0

Transcriptomic, proteomic, and phosphoproteomic analyses reveal dynamicsignaling networks influencing long-grain rice development

相似文章

所属期刊

作物学报(英文版)

推荐期刊

林业研究(英文版)

畜牧与生物技术杂志(英文版)